rs30704839 SNP Detail

Summary

• ID
  rs30704839
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:81149576 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AGAACAAGCC AGCAGGATCA
  GCACTTTAAT TGTCCTTGGT GGAAATTGAA TCCTTCTCTT CCTTTTAACC ACACATAGGG
  GAAAAAATGT AAAGTGCTTA GATTTTATTG AAGACATTTC ATAACCTGCT TCCTGTCTAG
  GGCTCTGATT TCACCCCTCC CCCTGAAATT AACTGAATAT TAATCATATC TTTAAAAAAA
  W
  TTTTATTACA TATTTTCCTC AATTACATTT CCAATGCTAT CCCAAAAGTC CCCCACATCC
  TTCCCCCCAC TCCCCTACCC ACCCATTCCC ATTTTTTGGC CCTGGCATTC CCCTGTACTG
  GGGCATATAA AGTTTGGCTG TCCAATTGGC CTCTCTTTCC AGTGATGGCC GACTAGGCCA
  TCTTTTGATA CATATGCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46435044	mCV24713753	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss135391208	ENSMUSSNP1455491	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30704839					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81149576 () rs orientation: reverse

Symbol	Name	Function Class
Rr578700	regulatory region 578700	666 bp proximal