rs30704858 SNP Detail

Summary

• ID
  rs30704858
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41536550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATG TGCTTTAGAA ATGATAGGTA
  K
  CAACTTAGCA ACTCAAAAGA GGCGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45457333	mCV24543867	ABI	CRAMUS_MOUSE	f	SNP	T	T	G					G		T
ss60397495	NES15899416	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	T	T	G		G	T	G	T		G		G
ss135042265	ENSMUSSNP4424157	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							T
ss320728824	CHEV_3_41386037	CHEVERUD	SCREENING_POP	f	SNP													T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30704858					SNP	T	T	G	G	T	T	G	G	G	T	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397495	NES15899416	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41536550 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Jade1	jade family PHD finger 1			Intron
				Noncoding-Transcript-Variant
Rr575976	regulatory region 575976			within coordinates
Rr575977	regulatory region 575977			1510 bp proximal