rs30706518 SNP Detail

Summary

• ID
  rs30706518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90711962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT TTATTCCTCC ATTGCACAGA
  Y
  CTCTCTGACC TCCAGTCTCA TGGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45955735	mCV25225643	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss133379011	ENSMUSSNP113536	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss321852505	CHEV_6_90684974	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30706518					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90711962 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17726	CpG island 17726			658 bp proximal
Iqsec1	IQ motif and Sec7 domain 1			Intron
				Noncoding-Transcript-Variant
Rr634305	regulatory region 634305			1309 bp proximal
Tssr62039	transcription start site region 62039			1132 bp downstream
Tssr62040	transcription start site region 62040			1776 bp downstream
Tssr62041	transcription start site region 62041			1798 bp downstream