rs30706647 SNP Detail

Summary

• ID
  rs30706647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172042158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGC AGGCCGCTCC CTGTGCCTCC
  R
  TTGACAACTG CTAGTGTCAA GAATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44955055	mCV23614828	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss120007503	PARCsnp_1.17830	PARC_SEQ	INBRED	f	SNP			G	A
ss120010415	PARCsnp_1.07475	PARC_SEQ	INBRED	f	SNP			G	A
ss146184104	ENSMUSSNP5947541	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320123276	CHEV_1_174144722	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30706647					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172042158 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	Intron
Gm17224	predicted gene 17224	905 bp downstream
Rr423487	regulatory region 423487	585 bp distal
Rr423488	regulatory region 423488	1989 bp proximal
Tssr15176	transcription start site region 15176	1516 bp upstream
Tssr15177	transcription start site region 15177	1462 bp upstream
Tssr15178	transcription start site region 15178	1429 bp upstream
Tssr15179	transcription start site region 15179	1413 bp upstream
Tssr15180	transcription start site region 15180	1193 bp upstream
Tssr15181	transcription start site region 15181	630 bp upstream
Tssr15182	transcription start site region 15182	449 bp downstream
Tssr15183	transcription start site region 15183	1390 bp downstream