rs30706974 SNP Detail

Summary

• ID
  rs30706974
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17846612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA TACATTCATT TTGGTATGGG
  M
  TGTTTGTTAT AGGACATACA GCTGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45458719	mCV22663580	ABI	CRAMUS_MOUSE	f	SNP		C	A					A		A
ss46817754	NES10864820	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	C	C	A		C		A		C	A	A	C		A
ss134653791	ENSMUSSNP3464036	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							A
ss320673721	CHEV_3_17692448	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30706974					SNP	C	C	A	A	C	C	A	A	C	A	A	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817754	NES10864820	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17846612 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12995	CpG island 12995	1767 bp distal
Cpgi12996	CpG island 12996	1389 bp proximal
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	within coordinates
Rr573848	regulatory region 573848	1681 bp distal
Rr573849	regulatory region 573849	154 bp distal
Rr573850	regulatory region 573850	172 bp proximal
Rr573851	regulatory region 573851	782 bp proximal
Tssr28485	transcription start site region 28485	1460 bp upstream
Tssr28486	transcription start site region 28486	1541 bp upstream
Tssr28487	transcription start site region 28487	1567 bp upstream
Tssr28488	transcription start site region 28488	1848 bp upstream