rs30707656 SNP Detail

Summary

• ID
  rs30707656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:93355277 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTGGG ACATTGGCAA ACTGGCGTGT
  R
  CCAGGCTCCA GGATTTGGCG GCGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45456779	mCV24750915	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss135485740	ENSMUSSNP5648203	ENSEMBL	ENSEMBL_Sanger	r	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30707656					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:93355277 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13475	CpG island 13475	within coordinates
Gm37245	predicted gene, 37245	within coordinates
Gm66249	predicted gene, 66249	107 bp upstream
Rr580539	regulatory region 580539	within coordinates
Tchh	trichohyalin	within coordinates
Tssr30400	transcription start site region 30400	1886 bp downstream
Tssr30401	transcription start site region 30401	1865 bp downstream
Tssr30402	transcription start site region 30402	1765 bp downstream
Tssr30403	transcription start site region 30403	1728 bp downstream
Tssr30404	transcription start site region 30404	589 bp downstream
Tssr30405	transcription start site region 30405	474 bp downstream
Tssr30406	transcription start site region 30406	327 bp downstream
Tssr30407	transcription start site region 30407	137 bp downstream
Tssr34372	transcription start site region 34372	1752 bp upstream
Tssr34373	transcription start site region 34373	567 bp upstream