rs30708290 SNP Detail

Summary

• ID
  rs30708290
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28037091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG TTACACTACA GAGGAAATTT
  M
  GCTTACTATG TTAAAGTAGA TCCGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45458936	mCV24248049	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss134709357	ENSMUSSNP3600358	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss320689848	CHEV_3_27881864	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30708290					SNP	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28037091 () rs orientation: forward

Symbol	Name	Function Class
Pld1	phospholipase D1	Intron
Rr574516	regulatory region 574516	44 bp distal
Rr574517	regulatory region 574517	804 bp proximal
Rr574518	regulatory region 574518	1242 bp proximal
Tssr28637	transcription start site region 28637	1203 bp upstream
Tssr28638	transcription start site region 28638	1330 bp upstream
Tssr28639	transcription start site region 28639	1693 bp upstream