rs30710922 SNP Detail

Summary

• ID
  rs30710922
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108640744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAA ATAGGGAGAT CCTAGATCCT
  R
  TCTCGTACAA AAAAAGGGGT GGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45958105	mCV24297784	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss133506715	ENSMUSSNP4571478	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss321893493	CHEV_6_108613777	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30710922					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108640744 () rs orientation: forward

Symbol	Name	Function Class
Bhlhe40	basic helix-loop-helix family, member e40	Intron
Rr399817	regulatory region 399817	1901 bp downstream
Rr636159	regulatory region 636159	1796 bp distal
Rr636160	regulatory region 636160	within coordinates
Tssr58079	transcription start site region 58079	1787 bp downstream
Tssr58080	transcription start site region 58080	1440 bp downstream
Tssr58081	transcription start site region 58081	1005 bp downstream
Tssr58082	transcription start site region 58082	641 bp downstream
Tssr58083	transcription start site region 58083	956 bp upstream
Tssr58084	transcription start site region 58084	1230 bp upstream
Tssr62392	transcription start site region 62392	1202 bp downstream