rs30711072 SNP Detail

Summary

• ID
  rs30711072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:154378298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAACTTC AACACCTCCC
  ACCCCTCAGT GCCTGGTACC GACTGGGATA TAAAATCGAT CATTTGAAAC TGGTGATCCA
  TTTTTCTTTG ACTGCTATTA TTTTTCTGAA ACAGTTATAA ACATTTATAA ATTAACAAAA
  ATACTGGGGG AGGGGTCAAA ATGCTGAAGG AAAAGAAGGA ACAGCAGGGA GCTAAACCGG
  Y
  AACATAAATT GCACAAAGCA CGCATGGAAC AGCCCTGCAA ACTGTGGGTT TCCAACGGGA
  TAGGATCACA TTGTTTTATA GTTGCCATTA ATTTGTCGTT CTCTCTGTGC GATGGGCTAT
  GATACTCCTT ATCTGTGGTG ATTATGCGCC TTTTGTATCG CGCAGTTCCT TCTCTACATG
  GCTTGCTTCG AGATATTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45459119	mCV24629884	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		C
ss47478224	NES10331893	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C		C	C	T	C	C	C	C	C	C
ss136117747	ENSMUSSNP4737368	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30711072					SNP	T	T	C	T	C	T	C	T	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47478224	NES10331893	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154378298 () rs orientation: forward

Symbol	Name	Function Class
D3Mit162	DNA segment, Chr 3, Massachusetts Institute of Technology 162	1584 bp proximal
Gm38139	predicted gene, 38139	within coordinates
Rr587887	regulatory region 587887	1232 bp distal