rs30713434 SNP Detail

Summary

• ID
  rs30713434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86402842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA GACCCCAGCT CAGGTGTCTA
  Y
  ACCTGGTAAT ACTAAAATCT TGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45957930	mCV22849687	ABI	CRAMUS_MOUSE	f	SNP		C				T	C
ss51753445	NES14807077	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		C	C	T		C		C	T	C		T
ss133357099	ENSMUSSNP3838011	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C					C
ss321846498	CHEV_6_86375854	CHEVERUD	SCREENING_POP	f	SNP										T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30713434					SNP	T	C	T	T	T	T	C	C	T	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51753445	NES14807077	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86402842 () rs orientation: forward

Symbol	Name	Function Class
Gm44790	predicted gene 44790	798 bp upstream
Tia1	cytotoxic granule-associated RNA binding protein 1	within coordinates