rs30713996 SNP Detail

Summary

• ID
  rs30713996
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40080635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACAATTA TATTATAATC
  TCAAAAGTAA ATTTAAAAAG AATATCAGAG TCTATATTTT TAAAAGTTCA CATTTTTCAT
  CTTTTCCTGG AGAGATGGCA TTCTGTAATG ACTTTATTTT ATACTGAAAG AAGGCAAACT
  TTTATGTCCT ATGCAAATAC CTGGGGACCT AGTGATATTT GATTCTACAC ATCATGTTTA
  S
  TCTTTCATGT AGTAATATCT TTGTCCATTC AACATTTATA TTATTTTGAG AAAAGATACT
  TTGTATTTCA GTAATAATTT ATACACATCA GCTCTATAAC ATACCTTCTC ATCCTGGTCC
  AGTCTTATGA TGCTGTTTTC TGTCAGGAAT ACTTCACATT CTTTGAGAAA GATATCATAT
  AATGCATGCC ACAAGAATAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47476726	NES11459200	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30713996					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47476726	NES11459200	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40080635 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr81026	transcription start site region 81026	1651 bp downstream
Tssr81027	transcription start site region 81027	1754 bp downstream
Tssr81028	transcription start site region 81028	1804 bp downstream
Tssr81029	transcription start site region 81029	1923 bp downstream