rs30714414 SNP Detail

Summary

• ID
  rs30714414
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3038127 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  ACTGAGAAAT CACGGGAAAA TGAGAAATAC ACACTTTAGG ACGTGAAATA TGGCGAGGAA
  AACTGAAAAC GGTGGATTAT TCAGAAATGT CCACTGTAAT ACGTGAAATA TGGCAAGAAA
  AGTGAAAATC ATGGAAAATG AGAAACATCC ACTTGACAAC TTGAAAAATG ACGAAATCAC
  TAAAAAACGT GAAAATGTGA AATGCACACT GAAGGACCTG GAATATGGCG AGAAAACTGA
  AAATCACGGA AAATGAGAAA TACACACTTT AGGACGTGAA ATATGGCGAG GAAAACTGAA
  R
  ACGGTGGAAA ATTTAGAAAT GTCCACTGTA GGACGTGGAA TATGGCAAGA AAACTGAAAA
  TCATGGAAAA TGAGAAACAT CCACTTGACG ACTTGAAAAA TGACGAAATC ACTAAAAAAC
  GTGAAAAGTG AGAAATGCAC ACTGAAGGAC CTGGAATATG GTGAGAAAAC TGAAAATCAC
  GGAAAATGAG AAATACACAC TTTAGGACGT GAAATATGGC GAGGAAAACT GAAAAAGGTG
  GAATATTTAG AAATTTCCAC TGTAGGACGT TGAATATGGC AAGAAAACTG AAATTCATGG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss46435910	mCV25359226	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs30714414					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3038127 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	1538 bp distal
Cpgi21329	CpG island 21329	within coordinates
Mir101c	microRNA 101c	542 bp downstream
Tssr83601	transcription start site region 83601	1784 bp downstream
Tssr83602	transcription start site region 83602	1740 bp downstream
Tssr83603	transcription start site region 83603	1726 bp downstream
Tssr83604	transcription start site region 83604	772 bp downstream
Tssr83605	transcription start site region 83605	93 bp downstream
Tssr83606	transcription start site region 83606	55 bp upstream
Tssr88026	transcription start site region 88026	1999 bp upstream
Tssr88027	transcription start site region 88027	1754 bp upstream
Tssr88028	transcription start site region 88028	1730 bp upstream
Tssr88029	transcription start site region 88029	57 bp upstream
Tssr88030	transcription start site region 88030	56 bp downstream