rs30714456 SNP Detail

Summary

• ID
  rs30714456
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119353805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACTTTC CTGTTACTAA
  TACTGCATAA TACACTGTTT TATTAACTTA TGCATTTCCT GTTCATTTTA TTCCTCCTTA
  ATTCTAAACA ACTGGGAATA ATGTTGGAAT TTACAGAAGA AAAAAAAAAT AGAGCCAGAA
  AGGAAAGGGG GGTTTATTTG CTCATAGTTT TTAATGCCTA TTATAAGTGT AGTGTTTTTG
  K
  TTTTTTTGTT TGTTTGTTTG TTTTGTTTTT TTGAGTAAGG AAGTTTTGGA AAATAAAGGA
  AGAAAACAGC CCTACATGTC TGCAGCATCT CCAAGTGATA AGGAAAGCGC TGATGTAGGA
  GGAACTGAAG CTGTCTGGCC TTACCTCTGC TTTTCAATCC ACCTGCCTCC CCAGGCACAG
  AGGTGCCCAC ACACTGCATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46436011	mCV22975019	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss138908017	ENSMUSSNP6704777	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30714456					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119353805 () rs orientation: forward

Symbol	Name	Function Class
Macc1	metastasis associated in colon cancer 1	328 bp upstream
Rr474303	regulatory region 474303	78 bp proximal
Rr474304	regulatory region 474304	316 bp proximal
Tssr115574	transcription start site region 115574	562 bp upstream
Tssr115575	transcription start site region 115575	620 bp upstream