rs30715792 SNP Detail

Summary

• ID
  rs30715792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70703368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAAGGT CAAGGACATT
  GAAGTAGGGC TTCCTGGCAG AGGACCCTGC TGGCAAGGCA GGATCACATA ATATGTTCTG
  GGTGTGACCC TGCCTTCTGG GACAGTTCCT TTGCCGGGGT CTGTCACACA CTGTTAGTTA
  TCTCTCCATT ACAGGACCCA GGAGCACAGA GGAGTGGGGC AGGGAGCAAA ATGAAAAACT
  Y
  TTGAGCATGG AAGGCTCTGA GGGAATCTCA GTTTTTTAGC TTCCAAGTTG AGTACAGAGG
  AGTCCAATGT TCCAAAAACC CATCTGGGAC AAATCTTTTA GGATACGGAT GAGAATCAGG
  TATGAGGAAG CCAAAGGACA GGGCTTGGAG GGTCCCACAC ACATGGCCCA ACCAGAGTAG
  CCTCAGTCTT ATTTGCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39214339	mCV24332331	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss51530311	NES14627562	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	T	C	C	C	C	C
ss139684667	ENSMUSSNP554203	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30715792					SNP	T	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51530311	NES14627562	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70703368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	938 bp proximal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Rr290302	regulatory region 290302	1233 bp proximal
Tssr4470	transcription start site region 4470	682 bp upstream
Tssr126423	transcription start site region 126423	527 bp upstream
Tssr126424	transcription start site region 126424	611 bp upstream
Tssr126425	transcription start site region 126425	638 bp upstream
Tssr126426	transcription start site region 126426	795 bp upstream
Tssr126427	transcription start site region 126427	892 bp upstream
Tssr126428	transcription start site region 126428	925 bp upstream
Tssr126429	transcription start site region 126429	1684 bp upstream
Tssr126430	transcription start site region 126430	1753 bp upstream
Tssr126431	transcription start site region 126431	1907 bp upstream
Tssr126432	transcription start site region 126432	1941 bp upstream