rs30715896 SNP Detail

Summary

• ID
  rs30715896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136936729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTTAATGA CTTTCACAAG GTCACAGATC
  AGAAGGCAAG GCAGAGGCAG GAATTTGAAG GCGGGCTGGT TCTGGTGTGT GAGCGAGCCC
  CTCACTTCTG GCCTGTCTAA CAGGATCTCT GCTGTAGAAT GCCAGGAACA ACAGTGCTAT
  Y
  TCAACTTCCC CGTTAGCATT TGCGGTTTGA GGACCCTGTC TAGGGAGGAA CTCCTTTCTG
  AAGGGGACAA TGCTGGTTAG CCTAGGGGCA GGGCTGGAGA TGGAGAGCGT GGCCCGTTGT
  TGGAGGAAGT GTGCCCTTGT GTGTTGAATT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44957323	mCV23233684	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss51384402	NES14473726	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	C	T	T		C	T	T	C		T
ss319997353	CHEV_1_138905568	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30715896					SNP	T	T	T	T	T	T	T	T	C	C	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51384402	NES14473726	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136936729 () rs orientation: forward

Symbol	Name	Function Class
Gm70790	predicted gene, 70790	within coordinates
Rr419562	regulatory region 419562	1277 bp proximal
Rr419563	regulatory region 419563	1383 bp proximal