rs30716979 SNP Detail

Summary

• ID
  rs30716979
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40081815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTACACTG AGAGACAGTA CACAAGAGAG GTTAAGATGC
  AAAAGTCATA GATAGAAATG CATGCTCCAT TACCAAGGAG TTTCAGTATT TTGGTGTGGA
  K
  AATGAAGATA ATTATAGTGT CTGCTGAAAG GGTAATTGTA AAGATGTATT AAGAGAATAT
  GCTGAAAGTT TATAGCCTGG TGCTCAGGCA TGGTAAATG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47476762	NES11459219	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	G	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30716979					SNP	G	T	G	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47476762	NES11459219	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40081815 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr81026	transcription start site region 81026	471 bp downstream
Tssr81027	transcription start site region 81027	574 bp downstream
Tssr81028	transcription start site region 81028	624 bp downstream
Tssr81029	transcription start site region 81029	743 bp downstream
Tssr81030	transcription start site region 81030	865 bp downstream
Tssr81031	transcription start site region 81031	1559 bp downstream