rs30717127 SNP Detail

Summary

• ID
  rs30717127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90825297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCTCTT CATACCACAC
  AAGAAGGAGT ATCAGCCTAT TTAATTCACA AAACATCTTT GCAGGGAGTA AGTTTCCATG
  GCAACATCAG TGAGGCTGAC AGGGACTGAG GCAACTTGCA GCATCTTCCT GTGTCAGCCC
  CTCAGGTGCT GTGTAGCCAA TGCCCTTGCC AGGCCCATCT CTGCCTGGCT TTGCTGAAAG
  R
  ACTGGGCTGC ATACAGCCAG TTATATAAGT GGTTGCCTTA GAAGAACTGC TGCCCTGAGT
  CACGTGGAGC TGGCAAACTA GTTCAAGGTA ATTTATGACT TTGGGATGCT TCAGTTTCTA
  AATACAACAG ACAGCTACAA ACTGCAAACA CTTTAAATTT CTGGCCCAAG GGGGATGTCA
  CAGTCCAACC TGGGCTGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45957776	mCV22638567	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G		G
ss60908337	NES15947367	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	A	G		G	G	G	G	G	G	G	G	G
ss133379895	ENSMUSSNP1593865	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30717127					SNP	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60908337	NES15947367	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90825297 () rs orientation: forward

Symbol	Name	Function Class
D6Mit229	DNA segment, Chr 6, Massachusetts Institute of Technology 229	1739 bp distal
Iqsec1	IQ motif and Sec7 domain 1	Intron