rs30717185 SNP Detail

Summary

• ID
  rs30717185
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85697498 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGTTG CTCTCCACCT CTTGGCTTTT
  R
  CTCCCACCAA CACCACCCTT TATTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46435943	mCV25193499	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss60245681	NES15750920	PERLEGEN	MM_PANEL2	r	SNP	T		C	T	T	T	C		C	C	C	C	C	C	T	C	T
ss148467957	ENSMUSSNP2928893	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30717185					SNP	A	A	G	A	A	A	G	A	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60245681	NES15750920	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85697498 () rs orientation: reverse

Symbol	Name	Function Class
Adamts5	ADAM metallopeptidase with thrombospondin type 1 motif 5	within coordinates
Cpgi8391	CpG island 8391	138 bp distal
Cpgi8392	CpG island 8392	21 bp proximal
Gm46558	predicted gene, 46558	within coordinates
Rr319329	regulatory region 319329	1098 bp distal
Rr325517	regulatory region 325517	within coordinates
Tssr141913	transcription start site region 141913	1254 bp upstream
Tssr141914	transcription start site region 141914	358 bp upstream
Tssr141915	transcription start site region 141915	330 bp upstream
Tssr141916	transcription start site region 141916	301 bp upstream
Tssr141917	transcription start site region 141917	within coordinates
Tssr141918	transcription start site region 141918	71 bp downstream
Tssr141919	transcription start site region 141919	109 bp downstream
Tssr141920	transcription start site region 141920	446 bp downstream
Tssr141921	transcription start site region 141921	508 bp downstream
Tssr141922	transcription start site region 141922	737 bp downstream
Tssr141923	transcription start site region 141923	1182 bp downstream