rs30717535 SNP Detail

Summary

• ID
  rs30717535
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40057773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTATTCTT AAGACTTTAA
  AGGTCTTCAT GGTTTTACAG ACATCTTCAC ACATATTTTG GTCCCCACAA CAACCCTGTG
  AGGTAGGAAT TGACATGATC ATTAACAGAG CATAAAATAG GAAAAGTGAG ATATACACAG
  GCATACAATT AGTAATCTGC TACTATCTTA ATGCTGCAGA CTTTAGGGTT TAGTGTTAAA
  R
  TACAGAGGAA AGTCCTGAAA AACATGTTCT GTTTACTCAC AAAGAGGCAT CAACATGGAA
  ACAACATGGT GTATTATATC TTTATTGTTC CTGCATTTTG TTTTCTTTTG TTCTCTTGTT
  CTGTATTTTC TCCCTTATTA TAACTTGTAC AAAATATCTC CATTTCTACT GCAATATTTA
  GTTTCCAGTA TACACACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47476465	NES11460448	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30717535					SNP	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47476465	NES11460448	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40057773 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr2550	transcription start site region 2550	735 bp downstream
Tssr80996	transcription start site region 80996	150 bp upstream
Tssr80997	transcription start site region 80997	127 bp upstream
Tssr80998	transcription start site region 80998	228 bp downstream
Tssr80999	transcription start site region 80999	292 bp downstream
Tssr81000	transcription start site region 81000	487 bp downstream
Tssr81001	transcription start site region 81001	543 bp downstream
Tssr81002	transcription start site region 81002	557 bp downstream
Tssr81003	transcription start site region 81003	579 bp downstream
Tssr81004	transcription start site region 81004	639 bp downstream
Tssr81005	transcription start site region 81005	660 bp downstream
Tssr81006	transcription start site region 81006	697 bp downstream
Tssr81007	transcription start site region 81007	762 bp downstream
Tssr81008	transcription start site region 81008	872 bp downstream
Tssr81009	transcription start site region 81009	888 bp downstream
Tssr81010	transcription start site region 81010	915 bp downstream
Tssr81011	transcription start site region 81011	993 bp downstream
Tssr81012	transcription start site region 81012	1018 bp downstream
Tssr81013	transcription start site region 81013	1186 bp downstream
Tssr81014	transcription start site region 81014	1213 bp downstream