rs30717538 SNP Detail

Summary

• ID
  rs30717538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:40059666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATATTAAA CACAGAAAAC
  CAGGACCTAT TATGTTAGAT GTATAGGCAT ATTATTATTT CTTCTCTTGG AATAGTTTAA
  AATTGCCTTT ACATTGTCTT TGGGGACACA TGTAAAAGAA CCAAGAGGCT GTATATGCTC
  ATACACAAAA ATAGCTCTTA CTGCTTTCTC AAAGGAAGTA TTCAGTCCAA AACAGCTGTG
  Y
  GAGTTCTTAA TTTAAATTTC TAGCCATAGC TGAAAAATTA TTAAAAATCA TTTGGTAACT
  GGGAAACAGA AAGCAGTATC GCTTTTCAAT ATAGAGACTA AAGTAGAGAA GCTCCTTACA
  TGCCAAACTC AACTAAAGCC TAAAGAAAGC CCTGGGGAAA GGAGATGAGA TCAAAACACT
  TTTATAAAAA GTATGAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47476468	NES11460406	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30717538					SNP	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47476468	NES11460406	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40059666 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	Intron
Tssr2550	transcription start site region 2550	1151 bp upstream
Tssr80998	transcription start site region 80998	1607 bp upstream
Tssr80999	transcription start site region 80999	1545 bp upstream
Tssr81000	transcription start site region 81000	1361 bp upstream
Tssr81001	transcription start site region 81001	1345 bp upstream
Tssr81002	transcription start site region 81002	1319 bp upstream
Tssr81003	transcription start site region 81003	1293 bp upstream
Tssr81004	transcription start site region 81004	1241 bp upstream
Tssr81005	transcription start site region 81005	1216 bp upstream
Tssr81006	transcription start site region 81006	1179 bp upstream
Tssr81007	transcription start site region 81007	1114 bp upstream
Tssr81008	transcription start site region 81008	1013 bp upstream
Tssr81009	transcription start site region 81009	982 bp upstream
Tssr81010	transcription start site region 81010	960 bp upstream
Tssr81011	transcription start site region 81011	893 bp upstream
Tssr81012	transcription start site region 81012	864 bp upstream
Tssr81013	transcription start site region 81013	700 bp upstream
Tssr81014	transcription start site region 81014	667 bp upstream
Tssr81015	transcription start site region 81015	922 bp downstream
Tssr81016	transcription start site region 81016	1527 bp downstream