rs30717541 SNP Detail

Summary

• ID
  rs30717541
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40060670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATATTCAT CCTATACACA
  TAAAATTACT GATGGCCTAG ACATATCAGC GGATATTTAA TATTTAGTGC TCGATGCCCT
  GGTTTTGTGC AATTCAATAA GAAGCCTGCA TTCCATTAAG GAAGCTCCCT GATGTGAAAG
  CTATTCCTCT GAAGGTTGGA AAGTGTGTAA TATGACATTT TCAAGGTTTT AGAAAAAAAA
  M
  CAAAATGAAA CAAAAGCCAT AGCTTCCAGA GAATAACTAG GTTAAGGTCT TCAGGTTTTC
  CTAATATCTA TATATCAGTT TCTGTTAAGC ATACTTAGTG TGTAAGAGGC CTCTGATTGT
  TTCTACTCAT GGGCTTGATT TCCTTCCAGT GGATAGAAAT TGATGTAGAA AATCGAACTA
  TTTTCTATGT GATTTTAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	PWD/PhJ
ss47476471	NES11460407	PERLEGEN	MM_PANEL2	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	PWD/PhJ
rs30717541					SNP	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47476471	NES11460407	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40060670 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr81009	transcription start site region 81009	1986 bp upstream
Tssr81010	transcription start site region 81010	1964 bp upstream
Tssr81011	transcription start site region 81011	1897 bp upstream
Tssr81012	transcription start site region 81012	1868 bp upstream
Tssr81013	transcription start site region 81013	1704 bp upstream
Tssr81014	transcription start site region 81014	1671 bp upstream
Tssr81015	transcription start site region 81015	70 bp upstream
Tssr81016	transcription start site region 81016	523 bp downstream