rs30717678 SNP Detail

Summary

• ID
  rs30717678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117536634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAAACTCC CTTGGGCCTA GTTAAGAGGC TTCAGAGGAG
  GTTCTGACAA TAGGATTGTG TTCTGTGAAA GAGAAGGTCT TATTTTGTCT CTTGTCATTC
  Y
  CCAGGGACTG GCAGCTTGTC TAACACCCTT ATCTCTATAG CACTGAGGAG TCCCATCACT
  TTCCCTGCCT CCCTTACCTG TCTTTAGAAA GAGGCCGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46436711	mCV24240487	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss138890314	ENSMUSSNP5938390	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss324202209	CHEV_12_118811487	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30717678					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117536634 () rs orientation: forward

Symbol	Name	Function Class
Gm54711	predicted gene, 54711	1328 bp upstream
Rapgef5	Rap guanine nucleotide exchange factor (GEF) 5	within coordinates