rs30717948 SNP Detail

Summary

• ID
  rs30717948
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40082402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTA CAATTAGAAG ACAGCCTGGG
  W
  AAAGGGATAA AACATATTCA TAACC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47476771	NES11459114	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T		T	T	T	A		T
ss144620709	ENSMUSSNP6437371	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss322624624	CHEV_8_40714715	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30717948					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47476771	NES11459114	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40082402 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr81026	transcription start site region 81026	104 bp upstream
Tssr81027	transcription start site region 81027	6 bp upstream
Tssr81028	transcription start site region 81028	37 bp downstream
Tssr81029	transcription start site region 81029	156 bp downstream
Tssr81030	transcription start site region 81030	278 bp downstream
Tssr81031	transcription start site region 81031	972 bp downstream
Tssr81032	transcription start site region 81032	1836 bp downstream
Tssr81033	transcription start site region 81033	1946 bp downstream
Tssr81034	transcription start site region 81034	1971 bp downstream