rs30717951 SNP Detail

Summary

• ID
  rs30717951
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40082511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGATGCC CTGACCTCAG
  CACTTAGAGG TAGGGGCAGG ACGACTAGCT ATTCAAAGTC ATCCTTAGCT ACAATTAGAA
  GACAGCCTGG GAAAAGGGAT AAAACATATT CATAACCACA ACAACAATAA TAATTCCTCC
  CAAAACAAAC AAAAGCAAAA CAGGCAAGCA AGCAAACAAA AAGCATTCAT TTAAAACTGT
  Y
  ATCTCAGCTC AAGCCAACTT CTTAGAGAAA TATTTTTCTG GAGAACATCA CTTAGAACCC
  AAGTAGCATA CCATACTTTT AAATTTTTTA CAGCTATTGC TGTGTTGCAG TTGATATATG
  TTTTAAATTA CAGCATGTGA AACACATCGA CTAGAGACAG TCATGATGTG ATATTCCTGT
  CTGATTTTCA CACTTGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47476774	NES11459115	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30717951					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47476774	NES11459115	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40082511 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr81026	transcription start site region 81026	213 bp upstream
Tssr81027	transcription start site region 81027	115 bp upstream
Tssr81028	transcription start site region 81028	61 bp upstream
Tssr81029	transcription start site region 81029	47 bp downstream
Tssr81030	transcription start site region 81030	169 bp downstream
Tssr81031	transcription start site region 81031	863 bp downstream
Tssr81032	transcription start site region 81032	1727 bp downstream
Tssr81033	transcription start site region 81033	1837 bp downstream
Tssr81034	transcription start site region 81034	1862 bp downstream