rs30718025 SNP Detail

Summary

• ID
  rs30718025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128177075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAT TGCTGGCACT GCCTGTGGAC
  R
  TTAGCTCCCG CCCATGCCCC AGCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45958181	mCV24158480	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss133637989	ENSMUSSNP2165372	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss321944116	CHEV_6_128150130	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30718025					SNP	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128177075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	within coordinates
Gm10010	predicted gene 10010	within coordinates
Gm66766	predicted gene, 66766	192 bp upstream
Rr399953	regulatory region 399953	395 bp upstream
Rr639207	regulatory region 639207	within coordinates
Rr639208	regulatory region 639208	203 bp proximal
Rr639209	regulatory region 639209	460 bp proximal
Rr639210	regulatory region 639210	607 bp proximal
Rr639211	regulatory region 639211	1384 bp proximal
Tssr63410	transcription start site region 63410	440 bp downstream
Tssr63411	transcription start site region 63411	462 bp downstream
Tssr63412	transcription start site region 63412	464 bp downstream
Tssr63413	transcription start site region 63413	486 bp downstream
Tssr63414	transcription start site region 63414	526 bp downstream