rs30718165 SNP Detail

Summary

• ID
  rs30718165
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:12739532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAAAATG CTCCTGACAA ACAGAACTTA AGAATATGAA
  TGAAATAAGC CTTTCTAACT TCGTAGAAAA ATAACTATCT ATACCTAAAT CATGAATGGA
  R
  TAAAACAAAA AGGCCTGTTA TTGTGATTAC TGTTTTCAGA TGTTTACTGT TGTCTAACTT
  GTTTTCAGGA GTCAACTCTT AATGTTTCTA TCTTCAAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44957442	mCV23019064	ABI	CRAMUS_MOUSE	f	SNP		G				G		A
ss50620960	NES13638055	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		A		G	G	A	G	G	A	G
ss146065395	ENSMUSSNP2837002	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30718165					SNP	G	G	G	G	G	G	A	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50620960	NES13638055	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:12739532 () rs orientation: forward

Symbol	Name	Function Class
Cntf	ciliary neurotrophic factor	1492 bp downstream
Gm44505	predicted readthrough transcript (NMD candidate), 44505	1492 bp downstream
Rr356731	regulatory region 356731	69 bp proximal
Rr359681	regulatory region 359681	1932 bp distal
Rr361368	regulatory region 361368	146 bp proximal