rs30718784 SNP Detail

Summary

• ID
  rs30718784
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40082529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTTAGA GGTAGGGGCA
  GGACGACTAG CTATTCAAAG TCATCCTTAG CTACAATTAG AAGACAGCCT GGGAAAAGGG
  ATAAAACATA TTCATAACCA CAACAACAAT AATAATTCCT CCCAAAACAA ACAAAAGCAA
  AACAGGCAAG CAAGCAAACA AAAAGCATTC ATTTAAAACT GTCATCTCAG CTCAAGCCAA
  M
  TTCTTAGAGA AATATTTTTC TGGAGAACAT CACTTAGAAC CCAAGTAGCA TACCATACTT
  TTAAATTTTT TACAGCTATT GCTGTGTTGC AGTTGATATA TGTTTTAAAT TACAGCATGT
  GAAACACATC GACTAGAGAC AGTCATGATG TGATATTCCT GTCTGATTTT CACACTTGGC
  ATGAAAAGCT TTCCGCAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47476777	NES11459116	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30718784					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47476777	NES11459116	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40082529 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr81026	transcription start site region 81026	231 bp upstream
Tssr81027	transcription start site region 81027	133 bp upstream
Tssr81028	transcription start site region 81028	79 bp upstream
Tssr81029	transcription start site region 81029	29 bp downstream
Tssr81030	transcription start site region 81030	151 bp downstream
Tssr81031	transcription start site region 81031	845 bp downstream
Tssr81032	transcription start site region 81032	1709 bp downstream
Tssr81033	transcription start site region 81033	1819 bp downstream
Tssr81034	transcription start site region 81034	1844 bp downstream