rs30719968 SNP Detail

Summary

• ID
  rs30719968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132516450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCAATACT ATGAGCTCAA GGTAACTGGT GTCTTGGCGG
  ATTGTTAGAG GAGAGCTAGG AGGATGACAT TCACGGAAGT GGACACTGCG TCAGTGGAGG
  Y
  CACTAAGGAG GTGCTAAAAG TGAGATGTTG ACCTTGGATG ACAGGGCGCT CATGATCCCA
  GTTCATGTAA TAAGAGAGTT CTAAGAAAAG TGATAACAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46977628	NES10887057	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	T	C	T	T	C	C	T	T
ss135914778	ENSMUSSNP6740429	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30719968					SNP	T	C	C	C	C	C	C	T	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977628	NES10887057	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132516450 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42876	predicted gene 42876			1222 bp downstream
Rr375756	regulatory region 375756			1514 bp upstream
Rr585456	regulatory region 585456			1190 bp proximal
Rr585457	regulatory region 585457			1571 bp proximal
Tbck	TBC1 domain containing kinase			Intron
				Noncoding-Transcript-Variant