rs30719970 SNP Detail

Summary

• ID
  rs30719970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132516542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGGAGGCC ACTAAGGAGG TGCTAAAAGT GAGATGTTGA
  CCTTGGATGA CAGGGCGCTC ATGATCCCAG TTCATGTAAT AAGAGAGTTC TAAGAAAAGT
  R
  ATAACAGCAT TTTTCATTTC AGTTAATACT ACTCAGTTAT AGATGGAGAA ACCACAGCTT
  AGCTATGTTT TCTTTTTGGC TATTGGTATA GATAGGTAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46977630	NES10887058	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	A	G	A	G	G	A
ss135914781	ENSMUSSNP2951656	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30719970					SNP	A	G	G	G	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977630	NES10887058	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132516542 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42876	predicted gene 42876			1314 bp downstream
Rr375756	regulatory region 375756			1422 bp upstream
Rr585456	regulatory region 585456			1098 bp proximal
Rr585457	regulatory region 585457			1479 bp proximal
Tbck	TBC1 domain containing kinase			Intron
				Noncoding-Transcript-Variant