rs30719989 SNP Detail

Summary

• ID
  rs30719989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170980297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA AAATCAGACA TAGTAATGCA
  Y
  ACCTGTAATC CCAGCACTCA GGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44957271	mCV24422397	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss119995582	PARCsnp_1.11868	PARC_SEQ	INBRED	f	SNP			C	T
ss119997127	PARCsnp_1.00832	PARC_SEQ	INBRED	f	SNP			C	T
ss146155040	ENSMUSSNP5889814	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320116732	CHEV_1_173082859	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30719989					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170980297 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1011	CpG island 1011	1968 bp distal
Mpz	myelin protein zero	within coordinates
Rr396555	regulatory region 396555	1776 bp downstream
Rr423228	regulatory region 423228	1165 bp distal