rs30720468 SNP Detail

Summary

• ID
  rs30720468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3031703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTTTTTAAGT GATTTCATCA TTTTTCAATT CGTCAAGTGG AAGTTTCTCA TTTTCCATGA
  ATTTCAGTTT TCTTGCCATA TTCCACGTCC TACAGTGGAC ATTTCTAATT TTTCCATCTT
  TTTCATTTTT CCCTCGCCAT TTTCACGTCC TAAAGTGTGT ATTTCTCATT TTCCGTGATT
  TTCAGTTTTC TTGCCATACC AGGTCCTTCA TTGTGCATTT CTCATTTTTC ACGTGTTTCA
  GTGATTTCGT CATTTTTCAA GTTGTCAAGT GGAAGTTTCT CATTTTCCAT GATTTTCATT
  Y
  ATCTTGCCAT ATTCCTTTTC CTACAGTGGA CATTTCTGAA TTCATCACTT TTTCAATTTC
  CTCGAAATAT TTCACGTTCT AAAGTGTGTA TTTCTCATTT TCCGTGTTTT CAATTTTCTC
  TCATATTCCA GGTCCTACAG TGTGCATTTT CTCATTTTTT CACGTTTTTC AGTGATTTCG
  TCATTTATCA AGTCGTCAAG TGGATGTTTC TCGTTTTCCC ATGATTTTCC GT        
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J
ss46437602	mCV24747904	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J
rs30720468					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3031703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21325	CpG island 21325	1993 bp distal
Cpgi21326	CpG island 21326	184 bp proximal
Cpgi21327	CpG island 21327	648 bp proximal
Rr673610	regulatory region 673610	1663 bp distal
Rr673611	regulatory region 673611	within coordinates
Rr673612	regulatory region 673612	428 bp proximal
Rr673613	regulatory region 673613	1088 bp proximal
Tssr83590	transcription start site region 83590	1527 bp downstream
Tssr83591	transcription start site region 83591	606 bp downstream
Tssr83592	transcription start site region 83592	589 bp downstream
Tssr83593	transcription start site region 83593	181 bp upstream
Tssr83594	transcription start site region 83594	296 bp upstream
Tssr83595	transcription start site region 83595	644 bp upstream
Tssr83596	transcription start site region 83596	732 bp upstream
Tssr88024	transcription start site region 88024	208 bp downstream