rs30720845 SNP Detail

Summary

• ID
  rs30720845
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132516891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCATCTATA ACAGGATCTG ATGCCCTCTT CTTGGTGTCT
  GAAGACAACT ACAGTGTACT TATATACATT TTAAAAATAA ATAATTCTAA ACTAGCTAGC
  M
  CAGAAAACAG GCCAGCACAG AGATATCTAG GATTTTATAA GCGGTGAAGT TGGTATGGTC
  TGATGAAGAG GCTTAGTACC CCTGAGTGCA GTGCCTAAT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46977636	NES10887015	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	C	C	C	A	C	A	C	C	A	A
ss135914793	ENSMUSSNP2549550	ENSEMBL	ENSEMBL_Sanger	f	SNP								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30720845					SNP	A	C	C	C	C	C	C	A	C	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977636	NES10887015	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132516891 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42876	predicted gene 42876			1663 bp downstream
Rr375756	regulatory region 375756			1073 bp upstream
Rr585456	regulatory region 585456			749 bp proximal
Rr585457	regulatory region 585457			1130 bp proximal
Tbck	TBC1 domain containing kinase			Intron
				Noncoding-Transcript-Variant