rs30721633 SNP Detail

Summary

• ID
  rs30721633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132519065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAGAGGC ATTCAAATGT
  GATTTTTATG TTCTAAACAC ATCTAATGAG TCTTTCCTCA TTTTTGAGAA AGAAAATAAG
  ATTAATCCAA GTTTGCCTCA AGTACCTAGC TCTGCCCTCC ACACCATCTT CCCTGCCAGC
  TATAGCATGA AGTAGTAGGA TTATCTAACA CAAACATCAT GGCCAAGGGG CACCCTGTCC
  Y
  TAGGGCATGT CTGAGGCTGT TCAAACAGGA AGGAAGGAAC AGGTGGGCTG TGTGGACATG
  CCTGCCCCTG CGCTTAGCTA GGATAGATCT GCATTGATTT TGCTGCTGTA AAACTGCTAA
  GTCAGGTGGA TCTCAGTCCA GAAGTGCTGG CTGAGAAACA CAAGGTCCTA CTGCAGCTGC
  TGCAGGCCTG CTGAGAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46977654	NES10886889	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30721633					SNP	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977654	NES10886889	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132519065 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr375756	regulatory region 375756			within coordinates
Rr585456	regulatory region 585456			1184 bp distal
Rr585457	regulatory region 585457			555 bp distal
Rr585458	regulatory region 585458			907 bp proximal
Rr585459	regulatory region 585459			1403 bp proximal
Tbck	TBC1 domain containing kinase			Intron
				Noncoding-Transcript-Variant
Tssr31762	transcription start site region 31762			1684 bp upstream