ATATAGAGGC ATTCAAATGT GATTTTTATG TTCTAAACAC ATCTAATGAG TCTTTCCTCA TTTTTGAGAA AGAAAATAAG ATTAATCCAA GTTTGCCTCA AGTACCTAGC TCTGCCCTCC ACACCATCTT CCCTGCCAGC TATAGCATGA AGTAGTAGGA TTATCTAACA CAAACATCAT GGCCAAGGGG CACCCTGTCC Y TAGGGCATGT CTGAGGCTGT TCAAACAGGA AGGAAGGAAC AGGTGGGCTG TGTGGACATG CCTGCCCCTG CGCTTAGCTA GGATAGATCT GCATTGATTT TGCTGCTGTA AAACTGCTAA GTCAGGTGGA TCTCAGTCCA GAAGTGCTGG CTGAGAAACA CAAGGTCCTA CTGCAGCTGC TGCAGGCCTG CTGAGAAGAA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46977654 | NES10886889 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | T | T | C |
SNP Consensus Information | |||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
PWD/PhJ |
WSB/EiJ |
||||
rs30721633 | SNP | C | C | C | C | C | C | C | T | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46977654 | NES10886889 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr3:132519065 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr375756 | regulatory region 375756 | within coordinates | ||||||
Rr585456 | regulatory region 585456 | 1184 bp distal | ||||||
Rr585457 | regulatory region 585457 | 555 bp distal | ||||||
Rr585458 | regulatory region 585458 | 907 bp proximal | ||||||
Rr585459 | regulatory region 585459 | 1403 bp proximal | ||||||
Tbck | TBC1 domain containing kinase | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Tssr31762 | transcription start site region 31762 | 1684 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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