rs30727738 SNP Detail

Summary

• ID
  rs30727738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70313284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCGCCA ACCCGGTGTG
  ATTCGGGGTC GCGCCTCCGT GCTCCCTCCC TCTCCTCCCC CTCGCTCTCA GCCAGGCTGC
  GCGCTTCAGG AGCAGGCCTC GGGGAACACA TCACCCACCC CCGGGATCCG CTGTCGAGGT
  GACAGCACCC TGGGTCGGCA CAGGGGGCCG CCCTTGACTG CAAGGCACCC TCAGGCAGCA
  R
  TGAGGACAAC CCTGCGGGAG ACAGAGAGTA GAGACTGGAG GAGACCGCCT TGGTGGCTTA
  GAATCTGTGG GTTTCACATC TTCCCGCAGT AACTCAGCCG CAAGCCCTTC GCCGGCTGCA
  GTAGATAGCG ACTGTGCCCC GGCCTGCTGG GCCCTCCTGC CATCCTGTGG CCAAAGGGGT
  TTGCTTTAGA ACCGTTAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39214945	mCV25164245	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss139680488	ENSMUSSNP6459432	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30727738					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70313284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6680	CpG island 6680	within coordinates
Cpgi6681	CpG island 6681	777 bp proximal
Egr3	early growth response 3	1482 bp upstream
Gm63137	predicted gene, 63137	109 bp downstream
Rr404186	regulatory region 404186	905 bp upstream
Rr494833	regulatory region 494833	717 bp distal
Rr494834	regulatory region 494834	977 bp distal
Rr494835	regulatory region 494835	123 bp distal
Rr494836	regulatory region 494836	878 bp proximal
Tssr126385	transcription start site region 126385	668 bp downstream
Tssr126386	transcription start site region 126386	636 bp downstream
Tssr126387	transcription start site region 126387	1072 bp upstream
Tssr126388	transcription start site region 126388	1091 bp upstream
Tssr126389	transcription start site region 126389	1333 bp upstream
Tssr126390	transcription start site region 126390	1371 bp upstream
Tssr126391	transcription start site region 126391	1471 bp upstream
Tssr126392	transcription start site region 126392	1540 bp upstream