rs30727878 SNP Detail

Summary

• ID
  rs30727878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117536897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCCTCC CTTACCTGTC
  TTTAGAAAGA GGCCGTGCTG GGGTGGTGCT ACTTAGCTGG ATTGTGTGAC TGTAACCCTG
  GAGGCTGCCT GGTTTAGGGT GGCAATGGAG AGAAACGCAA GTTGTTTGTT TCCTTTGTGA
  AAATATTCCT GCCCAGTTTT TTAGAACTGG TTTTTACCTA AGGAGAGCTT TTTTTATTGG
  R
  CTAGCTTGTG TGAAAGATTT GGTTTTGTTT GTTTTAACTG ATTGAGACAA TTCAATGAAT
  AAATGAAATG TGTTAGCTTT GGTCTGCCAC AATGTTCTTT TTGTTGTTGT TGTTGTTGTT
  GTTAAATTCT TGTTCAGGAT ATAAAAAGTA ACTTATGACA ACTCATCTTT ACAGGAAAAA
  TCTGGTGTAT ATGCAAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss46438648	mCV24240497	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss138890317	ENSMUSSNP2782501	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs30727878					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117536897 () rs orientation: forward

Symbol	Name	Function Class
Gm54711	predicted gene, 54711	1065 bp upstream
Rapgef5	Rap guanine nucleotide exchange factor (GEF) 5	within coordinates