rs30729494 SNP Detail

Summary

• ID
  rs30729494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:154379622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGAATTG CTATGGCCTA
  GAGACTCTGT TTTCTGGAAC CCATCTGAGA TCATAAAAGG CCTGAATAAC AAGTTTGGGG
  CATGATTTAA AGCCAGTGGT CCTTGCTGAA CCTTATTGTC CTTGGGCAGC CAGAGATCCC
  GTGTCAGGAA TCGCTTTGGC TGCAAACAGG AGAAAGGAAA TCAAGTGGAG ACTCAGGCCA
  Y
  GACAAAAGCT ATGATTTGTT TTATCTGCGG TATACATACA GGTGATTAAG GTTTTTATTA
  CTGTCAAGAC TTGGATTTGT TTCGTAAGTC TTGATCTCTG CAAATTTCTT AATATTTTTC
  TGATAGCAAG ATATAAAAAT TAAATTCAGG CATTATATTT TATTTTATAA AACCAGCACA
  AGTATGAAGG GAAGTGATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47478194	NES10331872	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30729494					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47478194	NES10331872	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154379622 () rs orientation: forward

Symbol	Name	Function Class
D3Mit162	DNA segment, Chr 3, Massachusetts Institute of Technology 162	260 bp proximal
Gm38139	predicted gene, 38139	within coordinates