rs30729497 SNP Detail

Summary

• ID
  rs30729497
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:154379573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTCAAA TGCAGTTCCC
  TGAGCATCTC CTGTGTGGTC GTGCCACATT CAGGAATTGC TATGGCCTAG AGACTCTGTT
  TTCTGGAACC CATCTGAGAT CATAAAAGGC CTGAATAACA AGTTTGGGGC ATGATTTAAA
  GCCAGTGGTC CTTGCTGAAC CTTATTGTCC TTGGGCAGCC AGAGATCCCG TGTCAGGAAT
  S
  GCTTTGGCTG CAAACAGGAG AAAGGAAATC AAGTGGAGAC TCAGGCCACG ACAAAAGCTA
  TGATTTGTTT TATCTGCGGT ATACATACAG GTGATTAAGG TTTTTATTAC TGTCAAGACT
  TGGATTTGTT TCGTAAGTCT TGATCTCTGC AAATTTCTTA ATATTTTTCT GATAGCAAGA
  TATAAAAATT AAATTCAGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47478197	NES10331870	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30729497					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47478197	NES10331870	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154379573 () rs orientation: forward

Symbol	Name	Function Class
D3Mit162	DNA segment, Chr 3, Massachusetts Institute of Technology 162	309 bp proximal
Gm38139	predicted gene, 38139	within coordinates