rs30732947 SNP Detail

Summary

• ID
  rs30732947
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:154278123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAC TTCACCGGCG CCTCCTAAGC
  M
  GCTCTAGGAC TGTGCGTGCT ACTCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss47479127	NES10333263	PERLEGEN	MM_PANEL2	f	SNP			C	C	C		A	C	C
ss136117000	ENSMUSSNP2604385	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs30732947					SNP	C	A	C	C	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47479127	NES10333263	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154278123 () rs orientation: forward

Symbol	Name	Function Class
Rr587866	regulatory region 587866	1999 bp distal
Rr587867	regulatory region 587867	971 bp distal
Rr587868	regulatory region 587868	within coordinates
Rr587869	regulatory region 587869	21 bp proximal
Rr587870	regulatory region 587870	189 bp proximal