rs30733007 SNP Detail

Summary

• ID
  rs30733007
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72338984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTAGAAAT AGCAGTCTCA AAGAAGTCGT TCAGGAATAA
  GCCAAAGTTG ATTCCAGGAC AGCAGTGAGT TTCTCTCCTT GCTTATTACT AGCAAAACAC
  W
  ACCCAGTTTA CACACTTGGG CACAGGCCGT GTCCGCCCCC ATGACAATCT TGTCCCGTGC
  CTCCCTTTGC TACACCCACC CTTTCTATCT TCGTCTTTCC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978928	NES11921261	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30733007					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978928	NES11921261	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72338984 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17541	CpG island 17541	23 bp proximal
Rnf181	ring finger protein 181	within coordinates
Rr368103	regulatory region 368103	323 bp upstream
Tssr61439	transcription start site region 61439	962 bp upstream
Tssr61440	transcription start site region 61440	562 bp upstream
Tssr61441	transcription start site region 61441	364 bp downstream
Tssr61442	transcription start site region 61442	382 bp downstream