rs30733011 SNP Detail

Summary

• ID
  rs30733011
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72339822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGCATTGAT TATGTTTTAT GCATAAAAAT GGGTGAAGGG
  CCTGGAGAGA TGGCTCAGCG CACCCAAGTT TTAGTCCCAG CACCCACTGG ATGGCGCACA
  R
  CACTATTTCC AGAGGGTCTG ATGCTCTGCG GGCACCAGGC AAATAAGTGA CAGACAGACA
  GACATGCAGC AAGACACCCA CTCGTATTAT AAATAAATAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978932	NES11921263	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30733011					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978932	NES11921263	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72339822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17541	CpG island 17541	284 bp distal
Rnf181	ring finger protein 181	within coordinates
Rr368103	regulatory region 368103	121 bp downstream
Rr632143	regulatory region 632143	within coordinates
Rr632144	regulatory region 632144	25 bp distal
Rr632145	regulatory region 632145	within coordinates
Rr632146	regulatory region 632146	1358 bp proximal
Rr632147	regulatory region 632147	1894 bp proximal
Tssr61439	transcription start site region 61439	1800 bp upstream
Tssr61440	transcription start site region 61440	1400 bp upstream
Tssr61441	transcription start site region 61441	460 bp upstream
Tssr61442	transcription start site region 61442	422 bp upstream