rs30733664 SNP Detail

Summary

• ID
  rs30733664
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72289570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGCCCT GGTGCCTAGG
  AGCCAGGATG CCCACATCAC CTGCCAGGTA TGCCCACTCT TCAGCTGGTC CCAGGAGTCC
  CCTCTGCTCC CACAGTCCCA CCCTCCTTGG TCTATGATCC TCAAGAGCCC CATTTCTTGG
  ATCCAGGAAG CCTAGGGCTC AGAAGCCCAG AACTAAGTGT ACCCATAGAA CAGGCTTTGG
  W
  CTTGGAGCAG AAAAGAACAC ATACTGATTA GGTGGGAGGG GCAAGTCCAT GATGGGATGG
  GCAGCTGGGG GCTGGGGTAT GATGCTCCTT ATTGCATGTG GTGTGTTTAG TGACCAGTTT
  GTTCTATGGT GGGGCTATAG TATGAGGTGG GGGTCCCACT AAGTCCCCAA GGCCATTGAC
  TTAGGGAATG GCACAAGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978534	NES11922798	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30733664					SNP	A	A	A	A	A	A	T	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978534	NES11922798	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72289570 () rs orientation: forward

Symbol	Name	Function Class
Gm67669	predicted gene, 67669	within coordinates
Rr632128	regulatory region 632128	716 bp proximal
Sftpb	surfactant associated protein B	within coordinates
Tssr1886	transcription start site region 1886	1967 bp upstream
Tssr57098	transcription start site region 57098	1941 bp downstream
Tssr57099	transcription start site region 57099	1840 bp downstream
Tssr57100	transcription start site region 57100	279 bp upstream
Tssr57101	transcription start site region 57101	1021 bp upstream
Tssr57102	transcription start site region 57102	1112 bp upstream
Tssr57103	transcription start site region 57103	1203 bp upstream
Tssr57104	transcription start site region 57104	1396 bp upstream
Tssr57105	transcription start site region 57105	1594 bp upstream
Tssr57106	transcription start site region 57106	1695 bp upstream
Tssr57107	transcription start site region 57107	1795 bp upstream
Tssr57108	transcription start site region 57108	1837 bp upstream
Tssr57109	transcription start site region 57109	1888 bp upstream
Tssr57110	transcription start site region 57110	1924 bp upstream
Tssr57111	transcription start site region 57111	1940 bp upstream
Tssr61420	transcription start site region 61420	1807 bp upstream
Tssr61421	transcription start site region 61421	1454 bp downstream