rs30733668 SNP Detail

Summary

• ID
  rs30733668
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72290181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGGGAAC AAGATGGTCA
  TCCTGCCCAC TTCTGTGGAC TGTGTCATCC TACCTCTGCC AGGCACAGTT CCAGGCTCCT
  CGGGGTCTCC AGTGGTTCCA TCAGGAAAAG GCAGTCTTTT GGACCTATCG TCACTCCTTG
  CTCTCCCACC CCATCCAGCC CTCCACAGCT TCTATCTAAG GCTTCATCAC ATCTGAGCTG
  M
  CTGACCTTAA AGATACTCCA TGTTCGAGCA ATGGCCAACA TTTCTTACTT CACTGTCTCG
  GCTGTCTCTC CCTCAGATGC CAGCAGCACC ATGGTCACCT GACCTCACCC TGCCCAGGCT
  CCCTGTTTTC TAAGCCAGAA ATAGCTCTGA CACCAGAGTC AGGAAATGAC ATGGGGAGTG
  GGGGGCGAGA AAGGCAACAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978538	NES11922800	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C	C	A	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30733668					SNP	C	C	A	C	C	C	C	C	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978538	NES11922800	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72290181 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	1697 bp proximal
Gm67669	predicted gene, 67669	within coordinates
Rr632128	regulatory region 632128	105 bp proximal
Sftpb	surfactant associated protein B	Intron
Tssr1886	transcription start site region 1886	1356 bp upstream
Tssr57100	transcription start site region 57100	280 bp downstream
Tssr57101	transcription start site region 57101	410 bp upstream
Tssr57102	transcription start site region 57102	501 bp upstream
Tssr57103	transcription start site region 57103	592 bp upstream
Tssr57104	transcription start site region 57104	785 bp upstream
Tssr57105	transcription start site region 57105	983 bp upstream
Tssr57106	transcription start site region 57106	1084 bp upstream
Tssr57107	transcription start site region 57107	1184 bp upstream
Tssr57108	transcription start site region 57108	1226 bp upstream
Tssr57109	transcription start site region 57109	1277 bp upstream
Tssr57110	transcription start site region 57110	1313 bp upstream
Tssr57111	transcription start site region 57111	1329 bp upstream
Tssr57112	transcription start site region 57112	1399 bp upstream
Tssr57113	transcription start site region 57113	1535 bp upstream
Tssr57114	transcription start site region 57114	1677 bp upstream
Tssr57115	transcription start site region 57115	1698 bp upstream
Tssr61421	transcription start site region 61421	843 bp downstream
Tssr61422	transcription start site region 61422	1417 bp downstream
Tssr61423	transcription start site region 61423	1465 bp downstream
Tssr61424	transcription start site region 61424	1506 bp downstream
Tssr61425	transcription start site region 61425	1570 bp downstream
Tssr61426	transcription start site region 61426	1582 bp downstream
Tssr61427	transcription start site region 61427	1808 bp downstream