rs30733672 SNP Detail

Summary

• ID
  rs30733672
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72290389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTGCCCAG GCTCCCTGTT TTCTAAGCCA GAAATAGCTC
  TGACACCAGA GTCAGGAAAT GACATGGGGA GTGGGGGGCG AGAAAGGCAA CAGTCTCTCA
  W
  GTGACCCTGA CAGTAATCTG GTCCAGGTCA CAATGTACTT AAAGCCAGCG CTCGCTGGGT
  AGTCATTTAT CCATTTGTTC CCATTTGTGA AAATCTGCTG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47978542	NES11922802	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30733672					SNP	A	A	A	A	A	A	A	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978542	NES11922802	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72290389 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	1489 bp proximal
Gm67669	predicted gene, 67669	75 bp upstream
Rr632128	regulatory region 632128	within coordinates
Sftpb	surfactant associated protein B	within coordinates
Tssr1886	transcription start site region 1886	1148 bp upstream
Tssr57100	transcription start site region 57100	488 bp downstream
Tssr57101	transcription start site region 57101	202 bp upstream
Tssr57102	transcription start site region 57102	293 bp upstream
Tssr57103	transcription start site region 57103	384 bp upstream
Tssr57104	transcription start site region 57104	577 bp upstream
Tssr57105	transcription start site region 57105	775 bp upstream
Tssr57106	transcription start site region 57106	876 bp upstream
Tssr57107	transcription start site region 57107	976 bp upstream
Tssr57108	transcription start site region 57108	1018 bp upstream
Tssr57109	transcription start site region 57109	1069 bp upstream
Tssr57110	transcription start site region 57110	1105 bp upstream
Tssr57111	transcription start site region 57111	1121 bp upstream
Tssr57112	transcription start site region 57112	1191 bp upstream
Tssr57113	transcription start site region 57113	1327 bp upstream
Tssr57114	transcription start site region 57114	1469 bp upstream
Tssr57115	transcription start site region 57115	1490 bp upstream
Tssr61421	transcription start site region 61421	635 bp downstream
Tssr61422	transcription start site region 61422	1209 bp downstream
Tssr61423	transcription start site region 61423	1257 bp downstream
Tssr61424	transcription start site region 61424	1298 bp downstream
Tssr61425	transcription start site region 61425	1362 bp downstream
Tssr61426	transcription start site region 61426	1374 bp downstream
Tssr61427	transcription start site region 61427	1600 bp downstream