rs30733704 SNP Detail

Summary

• ID
  rs30733704
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22174795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATTGACT TTAAACAGAT
  TAGTCTAGTT GTGATCACCT ACTGTGAGCC TGGGTCCCTA AAATGCTCCA TAAGAGGTAG
  AGCAAAAGAA GCCAACAGAT AGTAGAAAAT GAAATCCTAA GAAAACTCCA CCCAATTTCT
  CCAACAGAAG GAGAGAAAGG AGGGCAAAGG AACACAGACC ATAGTGGGTA AACTGAAGGC
  W
  GGTGAAAACG TCAGACTGCA GCCACAGCAG TCATTACACT AAGTGTTAAC AGCCTGGGCA
  TGTCATTGAA ATGCCCCAGG AAAGCCTGGC TGTGTGGTGC TCAGGCATGC CTTTGGCGGC
  TTTGGAACCT CAGGTTCCAA TGTCTTGGGA CCTCAGATAG AGTGGGGATG TGTGTGCTAG
  ACCTGCAAGA GAAGAGAAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49166010	NES12518372	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30733704					SNP	T	T	A	T	T	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49166010	NES12518372	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22174795 () rs orientation: forward

Symbol	Name	Function Class
Lrmda	leucine rich melanocyte differentiation associated	within coordinates
Rr488659	regulatory region 488659	1481 bp proximal
Rr488660	regulatory region 488660	1783 bp proximal
Tssr124482	transcription start site region 124482	1875 bp downstream
Tssr124483	transcription start site region 124483	1487 bp downstream
Tssr124484	transcription start site region 124484	1407 bp downstream
Tssr124485	transcription start site region 124485	936 bp downstream
Tssr124486	transcription start site region 124486	837 bp downstream