rs30733707 SNP Detail

Summary

• ID
  rs30733707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22173424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTAACAGC AACAACAGCA
  GCAGCAAATT CACTGAATCA GCCCGTGGTA CAGTGGAGAT GATAGAGTAA GGGCAGGGAG
  TTAGAGTCAT TCCTTAGAGT GAGGGAAATA ATGAAAATAA TATGAAGAGA AGCATAGGAG
  GGGAGCTCAG GAGTGGGCTG TATCAGGAGC CCACTATGTT CTAATACAAA TGACAGCACT
  Y
  AAATTCCATA AAGACAGGTG ACAGAATGGA GGGACAGACT GAAGACATAA CAGCTCATAA
  TGCCTCAAAC TTGGAAAATG ACACACACTG ATTGATTCAA AAGTTCAAGG ACCATGAAAG
  CAGGATTAAT TTAGAGAAAA TAAGAGTCTG GAGATATAGG GTGGTGGTCT AGCTGGCATA
  GGGCTCTGAC CTCAATCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49166013	NES12518444	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30733707					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49166013	NES12518444	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22173424 () rs orientation: forward

Symbol	Name	Function Class
Lrmda	leucine rich melanocyte differentiation associated	within coordinates
Tssr124480	transcription start site region 124480	1182 bp downstream
Tssr124481	transcription start site region 124481	903 bp downstream
Tssr124482	transcription start site region 124482	504 bp downstream
Tssr124483	transcription start site region 124483	116 bp downstream
Tssr124484	transcription start site region 124484	36 bp downstream
Tssr124485	transcription start site region 124485	421 bp upstream
Tssr124486	transcription start site region 124486	517 bp upstream