rs30733855 SNP Detail

Summary

• ID
  rs30733855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72339907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGAAAA TTCCCACGCA
  TTGATTATGT TTTATGCATA AAAATGGGTG AAGGGCCTGG AGAGATGGCT CAGCGCACCC
  AAGTTTTAGT CCCAGCACCC ACTGGATGGC GCACAACACT ATTTCCAGAG GGTCTGATGC
  TCTGCGGGCA CCAGGCAAAT AAGTGACAGA CAGACAGACA TGCAGCAAGA CACCCACTCG
  Y
  ATTATAAATA AATAAAGCAA TCGATGGTGC ATGTCTTTAA GTCTGGCACT CAGGAGGCAG
  AGCCAGGTGT TTTTCTGTGA GTGGGAGGCC AGCCAAGGCT AAAAAGTTGA GACCTTGTCT
  CAATCAATAA AAATAAAAAT TAAAACAAAT AAATATAAAC AATAAAAGAA GGAAAATAGA
  CAAAACCATG CATGATTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47978936	NES11921265	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30733855					SNP	T	T	C	T	T	T	T	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978936	NES11921265	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72339907 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17541	CpG island 17541	369 bp distal
Rnf181	ring finger protein 181	within coordinates
Rr368103	regulatory region 368103	206 bp downstream
Rr632143	regulatory region 632143	2 bp distal
Rr632144	regulatory region 632144	110 bp distal
Rr632145	regulatory region 632145	85 bp distal
Rr632146	regulatory region 632146	1273 bp proximal
Rr632147	regulatory region 632147	1809 bp proximal
Rr632148	regulatory region 632148	1967 bp proximal
Tssr61439	transcription start site region 61439	1885 bp upstream
Tssr61440	transcription start site region 61440	1485 bp upstream
Tssr61441	transcription start site region 61441	545 bp upstream
Tssr61442	transcription start site region 61442	507 bp upstream