rs30733857 SNP Detail

Summary

• ID
  rs30733857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72340103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCTAAAAA GTTGAGACCT TGTCTCAATC AATAAAAATA
  AAAATTAAAA CAAATAAATA TAAACAATAA AAGAAGGAAA ATAGACAAAA CCATGCATGA
  Y
  TAGGAGTTCA ACTTGGGCAG TTTACTGTAA TTCCAGCTCC AGGTAATGCC TCTTTGCTCC
  TCCTCCCCGG TACCTACATT CACCTGACAA AGCACACATA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978938	NES11921266	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30733857					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978938	NES11921266	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72340103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17541	CpG island 17541	565 bp distal
Rnf181	ring finger protein 181	within coordinates
Rr368103	regulatory region 368103	402 bp downstream
Rr632143	regulatory region 632143	198 bp distal
Rr632144	regulatory region 632144	306 bp distal
Rr632145	regulatory region 632145	281 bp distal
Rr632146	regulatory region 632146	1077 bp proximal
Rr632147	regulatory region 632147	1613 bp proximal
Rr632148	regulatory region 632148	1771 bp proximal
Tssr61440	transcription start site region 61440	1681 bp upstream
Tssr61441	transcription start site region 61441	741 bp upstream
Tssr61442	transcription start site region 61442	703 bp upstream