rs30733859 SNP Detail

Summary

• ID
  rs30733859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72340280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAGACA AAACCATGCA
  TGATTAGGAG TTCAACTTGG GCAGTTTACT GTAATTCCAG CTCCAGGTAA TGCCTCTTTG
  CTCCTCCTCC CCGGTACCTA CATTCACCTG ACAAAGCACA CATAGTTATA AAATAAATTT
  TTTTGAAATT TTTGAAAAGG GGGGGAGTGA CCGCCAGAGG ATTGCAAACT TAAGACCAGC
  R
  TGGGCTACAT AGTAAAATCC TGTCTTTAAA AAAATTCAAA GGAGAGGCAT ATTCAGGAAA
  AGAGCATTCC ATAAATACCT GATTGTAATT GTCTAGTACT GTAGTGCGGC ACCTCAGAGG
  GGCCTTAGAG TTCATGCTGA GCATCTGCTC TACCACTGAC CTGGGTCTCA GAAGTAGCTT
  GCCCAAAGTG AGTGCTGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss47978940	NES11921267	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs30733859					SNP	G	G	A	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978940	NES11921267	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72340280 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17541	CpG island 17541	742 bp distal
Rnf181	ring finger protein 181	within coordinates
Rr368103	regulatory region 368103	579 bp downstream
Rr632143	regulatory region 632143	375 bp distal
Rr632144	regulatory region 632144	483 bp distal
Rr632145	regulatory region 632145	458 bp distal
Rr632146	regulatory region 632146	900 bp proximal
Rr632147	regulatory region 632147	1436 bp proximal
Rr632148	regulatory region 632148	1594 bp proximal
Rr632149	regulatory region 632149	1830 bp proximal
Tssr61440	transcription start site region 61440	1858 bp upstream
Tssr61441	transcription start site region 61441	918 bp upstream
Tssr61442	transcription start site region 61442	880 bp upstream