rs30733861 SNP Detail

Summary

• ID
  rs30733861
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72340317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCAGTTT ACTGTAATTC
  CAGCTCCAGG TAATGCCTCT TTGCTCCTCC TCCCCGGTAC CTACATTCAC CTGACAAAGC
  ACACATAGTT ATAAAATAAA TTTTTTTGAA ATTTTTGAAA AGGGGGGGAG TGACCGCCAG
  AGGATTGCAA ACTTAAGACC AGCGTGGGCT ACATAGTAAA ATCCTGTCTT TAAAAAAATT
  M
  AAAGGAGAGG CATATTCAGG AAAAGAGCAT TCCATAAATA CCTGATTGTA ATTGTCTAGT
  ACTGTAGTGC GGCACCTCAG AGGGGCCTTA GAGTTCATGC TGAGCATCTG CTCTACCACT
  GACCTGGGTC TCAGAAGTAG CTTGCCCAAA GTGAGTGCTG CTGACCCACC TAGCAGGGCA
  AAGTGCTATC CCCCCATCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47978942	NES11921268	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	A	C	C	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30733861					SNP	C	C	A	C	C	C	A	C	C	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978942	NES11921268	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72340317 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17541	CpG island 17541	779 bp distal
Rnf181	ring finger protein 181	within coordinates
Rr368103	regulatory region 368103	616 bp downstream
Rr632143	regulatory region 632143	412 bp distal
Rr632144	regulatory region 632144	520 bp distal
Rr632145	regulatory region 632145	495 bp distal
Rr632146	regulatory region 632146	863 bp proximal
Rr632147	regulatory region 632147	1399 bp proximal
Rr632148	regulatory region 632148	1557 bp proximal
Rr632149	regulatory region 632149	1793 bp proximal
Tssr61440	transcription start site region 61440	1895 bp upstream
Tssr61441	transcription start site region 61441	955 bp upstream
Tssr61442	transcription start site region 61442	917 bp upstream