rs30734524 SNP Detail

Summary

• ID
  rs30734524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72290439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGCTGTCT CTCCCTCAGA
  TGCCAGCAGC ACCATGGTCA CCTGACCTCA CCCTGCCCAG GCTCCCTGTT TTCTAAGCCA
  GAAATAGCTC TGACACCAGA GTCAGGAAAT GACATGGGGA GTGGGGGGCG AGAAAGGCAA
  CAGTCTCTCA AGTGACCCTG ACAGTAATCT GGTCCAGGTC ACAATGTACT TAAAGCCAGC
  R
  CTCGCTGGGT AGTCATTTAT CCATTTGTTC CCATTTGTGA AAATCTGCTG GTGTGCACAG
  CTGGCCCACC ACTTCTAATG CGAGGAAGGA CCCCAGCACT GTCACAGCCA CTGTGGGCAG
  AGGGGCACTT CAAGTCAGTA AGTCCCTTGG GGGCCAATTT AATGTCTCCC CTCCCATCCC
  CCATCAAGTC CATCTGGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978544	NES11922803	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30734524					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978544	NES11922803	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72290439 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	1439 bp proximal
Gm67669	predicted gene, 67669	125 bp upstream
Rr632128	regulatory region 632128	within coordinates
Sftpb	surfactant associated protein B	within coordinates
Tssr1886	transcription start site region 1886	1098 bp upstream
Tssr57100	transcription start site region 57100	538 bp downstream
Tssr57101	transcription start site region 57101	152 bp upstream
Tssr57102	transcription start site region 57102	243 bp upstream
Tssr57103	transcription start site region 57103	334 bp upstream
Tssr57104	transcription start site region 57104	527 bp upstream
Tssr57105	transcription start site region 57105	725 bp upstream
Tssr57106	transcription start site region 57106	826 bp upstream
Tssr57107	transcription start site region 57107	926 bp upstream
Tssr57108	transcription start site region 57108	968 bp upstream
Tssr57109	transcription start site region 57109	1019 bp upstream
Tssr57110	transcription start site region 57110	1055 bp upstream
Tssr57111	transcription start site region 57111	1071 bp upstream
Tssr57112	transcription start site region 57112	1141 bp upstream
Tssr57113	transcription start site region 57113	1277 bp upstream
Tssr57114	transcription start site region 57114	1419 bp upstream
Tssr57115	transcription start site region 57115	1440 bp upstream
Tssr61421	transcription start site region 61421	585 bp downstream
Tssr61422	transcription start site region 61422	1159 bp downstream
Tssr61423	transcription start site region 61423	1207 bp downstream
Tssr61424	transcription start site region 61424	1248 bp downstream
Tssr61425	transcription start site region 61425	1312 bp downstream
Tssr61426	transcription start site region 61426	1324 bp downstream
Tssr61427	transcription start site region 61427	1550 bp downstream